Proteome

Improved comparative proteome analysis based on two-dimensional gel electrophoresis

Proteomics / Biological Sciences / Software / Brain / Animals / Male / Power Analysis / Rats / Rat / Reproducibility of Results / Proteome analysis / Two-Dimensional Gel Electrophoresis / Two dimensional Gel Electrophoresis / Proteome / Male / Power Analysis / Rats / Rat / Reproducibility of Results / Proteome analysis / Two-Dimensional Gel Electrophoresis / Two dimensional Gel Electrophoresis / Proteome

Serological and antigenic profiles of clinical isolates of Paracoccidioides spp. from Central Western Brazil

Microbiology / Immunology / Proteomics / Brazil / Protein / Fungi / Medical Mycology / Serology / Humans / Diagnosis / Clinical Sciences / Antibody / Proteome / Enzyme Linked Immunosorbent Assay / Paracoccidioides / Serotyping / Fungi / Medical Mycology / Serology / Humans / Diagnosis / Clinical Sciences / Antibody / Proteome / Enzyme Linked Immunosorbent Assay / Paracoccidioides / Serotyping

Environmental and structural proteomics

Proteomics / Quantitative Structure Activity Relationship / Ecosystem / Proteome / Biochemistry and cell biology / Gene expression profiling

Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression

Gene expression / Multidisciplinary / Glycoside hydrolase / Peroxidase / Applied / Applied Environmental Microbiology / Nitrogen / Tandem Mass Spectrometry / High Performance Liquid Chromatography / Enzyme / Microarray Analysis / Wood Decay / Proteome / Carbon Source / Glutamic Acid / Microcrystalline Cellulose / Gene expression profiling / Applied Environmental Microbiology / Nitrogen / Tandem Mass Spectrometry / High Performance Liquid Chromatography / Enzyme / Microarray Analysis / Wood Decay / Proteome / Carbon Source / Glutamic Acid / Microcrystalline Cellulose / Gene expression profiling

A computational method to predict genetically encoded rare amino acids in proteins

Genetics / Computational Biology / Biological Sciences / Environmental Sciences / Sequence alignment / Archaea / Amino Acids / Lysine / Amino Acid Profile / Selenoproteins / Amino Acid Sequence / Proteome / Genetic Code / Nucleic Acid Conformation / Computational Method / Molecular Sequence Data / Archaea / Amino Acids / Lysine / Amino Acid Profile / Selenoproteins / Amino Acid Sequence / Proteome / Genetic Code / Nucleic Acid Conformation / Computational Method / Molecular Sequence Data

Oxidation of cellular amino acid pools leads to cytotoxic mistranslation of the genetic code

Oxidative Stress / Saccharomyces cerevisiae / Escherichia coli / Proteins / Plasmids / Amino Acids / Oxygen / Hydrolysis / Proteome / Genetic Code / Elife / Protein Biosynthesis / Adenosine Triphosphate / Amino Acids / Oxygen / Hydrolysis / Proteome / Genetic Code / Elife / Protein Biosynthesis / Adenosine Triphosphate

Transcriptional and proteomic responses to carbon starvation in Paracoccidioides

Carbon / Macrophages / Transcriptome / Biological Sciences / Cell line / Mice / Animals / Physiological Stress Markers / Host Pathogen Interactions / Proteome / Paracoccidioides / Mice / Animals / Physiological Stress Markers / Host Pathogen Interactions / Proteome / Paracoccidioides

From genomes to vaccines: Leishmania as a model

Leishmania / Biological Sciences / Humans / Animals / DNA vaccines / Protozoan Proteins / Proteome / Gene expression profiling / Protozoan Proteins / Proteome / Gene expression profiling

Steatosis-Induced Proteomic Changes in Liver Mitochondria Evidenced by Two-Dimensional Differential In-Gel Electrophoresis

Mass Spectrometry / Proteomics / Oxidative Stress / Mitochondria / Biological Sciences / Liver / Fatty acids / Mice / Animals / Male / Lipid peroxidation / High Pressure Liquid Chromatography / CHEMICAL SCIENCES / Fatty Liver / Hepatocytes / Peroxisomes / Gel electrophoresis / Two-Dimensional Gel Electrophoresis / Proteome / Adenosine Triphosphate / Liver / Fatty acids / Mice / Animals / Male / Lipid peroxidation / High Pressure Liquid Chromatography / CHEMICAL SCIENCES / Fatty Liver / Hepatocytes / Peroxisomes / Gel electrophoresis / Two-Dimensional Gel Electrophoresis / Proteome / Adenosine Triphosphate

De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation

Chemical Engineering / Algorithms / Analytical Chemistry / Peptides / Tandem Mass Spectrometry / Protein Sequence Analysis / Electrophoresis / Proteome / Electron Transfer Dissociation / Biochemistry and cell biology / Protein Sequence Analysis / Electrophoresis / Proteome / Electron Transfer Dissociation / Biochemistry and cell biology

Determination of Variation Parameters as a Crucial Step in Designing TMT-Based Clinical Proteomics Experiments

Proteomics / Multidisciplinary / Humans / Female / Male / Cluster Analysis / Peptides / Tandem Mass Spectrometry / PLoS one / Middle Aged / Pilot Projects / Proteome / Cluster Analysis / Peptides / Tandem Mass Spectrometry / PLoS one / Middle Aged / Pilot Projects / Proteome

Conditional clustering of temporal expression profiles

Algorithms / Gene expression / Signal Transduction / Biological Sciences / Computer Simulation / Mathematical Sciences / Cluster Analysis / BMC Bioinformatics / Clustered Data / Clustering Method / Proteome / Time Course / Gene expression profiling / Linear Transformation / Mathematical Sciences / Cluster Analysis / BMC Bioinformatics / Clustered Data / Clustering Method / Proteome / Time Course / Gene expression profiling / Linear Transformation

Pan-phylum Comparison of Nematode Metabolic Potential

Caenorhabditis elegans / Transcriptome / Biological Sciences / Phylogeny / Humans / Female / Animals / Male / Gene Regulatory Networks / Nematoda / Species Specificity / Proteome / Metabolome / Female / Animals / Male / Gene Regulatory Networks / Nematoda / Species Specificity / Proteome / Metabolome

Comprehensive multiplexed protein quantitation delineates eosinophilic and neutrophilic experimental asthma

Mass Spectrometry / Inflammation / Asthma / Mice / Female / Animals / Anti-inflammatory agents / Phenotype / Neutrophils / Lipopolysaccharides / Eosinophils / Biological markers / Proteome / Respiratory Mechanics / Animals / Anti-inflammatory agents / Phenotype / Neutrophils / Lipopolysaccharides / Eosinophils / Biological markers / Proteome / Respiratory Mechanics

Identification of protein components in in vivo human acquired enamel pellicle using LC-ESI-MS/MS

Proteomics / Nanotechnology / Biological Sciences / Humans / Female / Male / Peptides / Proteins / High Pressure Liquid Chromatography / CHEMICAL SCIENCES / Liquid Chromatography / Electrospray Ionization Mass Spectrometry / Adult / Dental Pellicle / Amino Acid Sequence / Proteome / Male / Peptides / Proteins / High Pressure Liquid Chromatography / CHEMICAL SCIENCES / Liquid Chromatography / Electrospray Ionization Mass Spectrometry / Adult / Dental Pellicle / Amino Acid Sequence / Proteome

A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology

Machine Learning / Mass Spectrometry / Fluorescence Microscopy / Cell Biology / Mitochondria / Biological Sciences / Humans / Mutation / Mice / Female / Animals / Cell / Male / Evolutionary History / Spectrum / Protein Expression / Proteome / Biological Sciences / Humans / Mutation / Mice / Female / Animals / Cell / Male / Evolutionary History / Spectrum / Protein Expression / Proteome

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