Protein Sequence Analysis - Page 4

An Empirical Codon Model for Protein Sequence Evolution

Evolutionary Biology / Genetics / Molecular Evolution / Phylogeny / Mutation / Maximum Likelihood / Molecular biology and evolution / Protein evolution / Protein Sequence Analysis / Codon / Amino Acid Sequence / Likelihood Functions / Biochemistry and cell biology / Markov model / Maximum Likelihood / Molecular biology and evolution / Protein evolution / Protein Sequence Analysis / Codon / Amino Acid Sequence / Likelihood Functions / Biochemistry and cell biology / Markov model

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Sequence mining and transcript profiling to explore cyst nematode parasitism

Gene expression / Biological Sciences / Expressed Sequence Tags / Animals / Animal-Plant Interaction / Host-parasite interactions / Life Cycle / Soybean / Protein Sequence Analysis / Soybeans / SIGNAL PEPTIDE / Sequence Mining / Gene expression profiling / Histone deacetylases / Host-parasite interactions / Life Cycle / Soybean / Protein Sequence Analysis / Soybeans / SIGNAL PEPTIDE / Sequence Mining / Gene expression profiling / Histone deacetylases

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In planta anthocyanin degradation by a vacuolar class III peroxidase in Brunfelsia calycina flowers

Biological Sciences / Phylogeny / Peroxidase / Flowers / Anthocyanins / Protein Sequence Analysis / Solanaceae / Amino Acid Sequence / Base Sequence / PLANT PROTEINS / Protein Sequence Analysis / Solanaceae / Amino Acid Sequence / Base Sequence / PLANT PROTEINS

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Comparative interactomics

Computational Biology / Comparative Genomics / Proteomics / Humans / Network evolution / Animals / Biological evolution / Protein Sequence Analysis / Protein Interaction / Biological systems / Model System / Very high throughput / Genetic variation / Biochemistry and cell biology / Interaction Network / Animals / Biological evolution / Protein Sequence Analysis / Protein Interaction / Biological systems / Model System / Very high throughput / Genetic variation / Biochemistry and cell biology / Interaction Network

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De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation

Chemical Engineering / Algorithms / Analytical Chemistry / Peptides / Tandem Mass Spectrometry / Protein Sequence Analysis / Electrophoresis / Proteome / Electron Transfer Dissociation / Biochemistry and cell biology / Protein Sequence Analysis / Electrophoresis / Proteome / Electron Transfer Dissociation / Biochemistry and cell biology

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Unusual location and characterization of Cu/Zn-containing superoxide dismutase from filamentous fungus Humicola lutea

Microbiology / Medical Microbiology / Archives / Enzyme Inhibitors / Mitochondria / Western blotting / Cell Fractionation / Superoxide Dismutase / Enzyme / Glycosylation / Protein Sequence Analysis / Model System / Filamentous fungi / Enzyme activity / Molecular Mass / Molecular weight / Amino Acid Sequence / Ascomycota / Superoxide Anion / Electrophoretic Mobility / Western blotting / Cell Fractionation / Superoxide Dismutase / Enzyme / Glycosylation / Protein Sequence Analysis / Model System / Filamentous fungi / Enzyme activity / Molecular Mass / Molecular weight / Amino Acid Sequence / Ascomycota / Superoxide Anion / Electrophoretic Mobility

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Identification and characterization of the ecdysteroid UDP-glucosyltransferase gene of the Lymantria dispar multinucleocapsid nuclear polyhedrosis virus

Protein synthesis / Biological Sciences / Molecular cloning / Protein Sequence Analysis / Amino Acid Profile / SIGNAL PEPTIDE / Lymantria Dispar / Amino Acid Sequence / Base Sequence / Open Reading Frame / Gypsy Moth / Nucleotides / Dna Synthesis / SIGNAL PEPTIDE / Lymantria Dispar / Amino Acid Sequence / Base Sequence / Open Reading Frame / Gypsy Moth / Nucleotides / Dna Synthesis

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Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032

Oxidative Stress / Gamma Rays / DNA repair / Multidisciplinary / Stress response / Uv Radiation / Bacillus / Gene Order / Sterilization / PLoS one / Hydrogen Peroxide / Protein Sequence Analysis / Uv Radiation / Bacillus / Gene Order / Sterilization / PLoS one / Hydrogen Peroxide / Protein Sequence Analysis

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De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation

Chemical Engineering / Algorithms / Analytical Chemistry / Peptides / Tandem Mass Spectrometry / Protein Sequence Analysis / Electrophoresis / Proteome / Electron Transfer Dissociation / Biochemistry and cell biology / Protein Sequence Analysis / Electrophoresis / Proteome / Electron Transfer Dissociation / Biochemistry and cell biology

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Super paramagnetic clustering of protein sequences

Algorithms / Computer Graphics / Programming Languages / Computational Biology / Helicobacter pylori / Database Management Systems / Biological Sciences / Software / Sequence alignment / Markov chains / Computer Simulation / Mathematical Sciences / Listeria monocytogenes / Cluster Analysis / BMC Bioinformatics / Genome / Proteins / Information Storage and Retrieval / Protein Sequence Analysis / Clustering Method / Magnetics / Bacillus subtilis / Listeria / S100 protein family / Monte Carlo Method / Automatic Annotation / Database Management Systems / Biological Sciences / Software / Sequence alignment / Markov chains / Computer Simulation / Mathematical Sciences / Listeria monocytogenes / Cluster Analysis / BMC Bioinformatics / Genome / Proteins / Information Storage and Retrieval / Protein Sequence Analysis / Clustering Method / Magnetics / Bacillus subtilis / Listeria / S100 protein family / Monte Carlo Method / Automatic Annotation

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Evidence for Lateral Transfer of Genes Encoding Ferredoxins, Nitroreductases, NADH Oxidase, and Alcohol Dehydrogenase 3 from Anaerobic Prokaryotes to Giardialamblia and Entamoebahistolytica

Mitochondria / Horizontal Gene Transfer / Biological Sciences / Phylogeny / Sequence alignment / Gram Positive / Animals / Anaerobic Bacteria / Oxidoreductases / Bacteria / Trichomonas vaginalis / Evolutionary History / Electron Transport / Enzyme / Fermentation / Protein Sequence Analysis / Molecular Characterization / Group / Phylogenetic Tree / Multienzyme complexes / Entamoeba histolytica / Amino Acid Sequence / Fusion Protein / Alcohol Dehydrogenase / Eukaryotic Cell / Gram Positive / Animals / Anaerobic Bacteria / Oxidoreductases / Bacteria / Trichomonas vaginalis / Evolutionary History / Electron Transport / Enzyme / Fermentation / Protein Sequence Analysis / Molecular Characterization / Group / Phylogenetic Tree / Multienzyme complexes / Entamoeba histolytica / Amino Acid Sequence / Fusion Protein / Alcohol Dehydrogenase / Eukaryotic Cell

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Transport of physiological nucleosides and anti-viral and anti-neoplastic nucleoside drugs by recombinant Escherichia coli nucleoside-H + cotransporter (NupC) produced in Xenopus laevis oocytes

Kinetics / Molecular / Humans / Sequence alignment / Escherichia coli / Female / Animals / Membrane transport proteins / Protein Sequence Analysis / Substrate Specificity / Xenopus laevis / Oocytes / Nucleosides / Recombinant Proteins / Antineoplastic Agents / Antiviral Agents / Biochemistry and cell biology / Female / Animals / Membrane transport proteins / Protein Sequence Analysis / Substrate Specificity / Xenopus laevis / Oocytes / Nucleosides / Recombinant Proteins / Antineoplastic Agents / Antiviral Agents / Biochemistry and cell biology

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Complete Amino Acid Sequence and Location of Omp-28, an Important Immunogenic Protein from Salmonella enterica serovar typhi

Protein / Escherichia coli / Protein Sequence Analysis / Gram-negative bacteria / MDR Salmonella typhi / Genomic DNA / Protein Secondary Structure Prediction / Molecular Mass / Amino Acid Sequence / Yersinia Pestis / Outer Membrane Protein / Biochemistry and cell biology / Genomic DNA / Protein Secondary Structure Prediction / Molecular Mass / Amino Acid Sequence / Yersinia Pestis / Outer Membrane Protein / Biochemistry and cell biology

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Parallel processing in biological sequence comparison using general purpose processors

Computational Complexity / Molecular Biology / Parallel Processing / IEEE / Protein Sequence Analysis / String Matching

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Parallel processing in biological sequence comparison using general purpose processors

Computational Complexity / Molecular Biology / Parallel Processing / IEEE / Protein Sequence Analysis / String Matching

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Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior

Evolutionary Biology / Genetics / Molecular Evolution / Software / Computer Simulation / Animals / Molecular biology and evolution / Proteins / Protein Sequence Analysis / Protein Conformation / Bayes Theorem / Likelihood Functions / Biochemistry and cell biology / Animals / Molecular biology and evolution / Proteins / Protein Sequence Analysis / Protein Conformation / Bayes Theorem / Likelihood Functions / Biochemistry and cell biology

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