Protein Secondary Structure Prediction - Page 5

Sequence comparison and environmental adaptation of a bacterial endonuclease

Computational Biology / Molecular Evolution / Statistical Analysis / Brackish Water / Sequence Analysis / Biological Sciences / Sequence alignment / Bacteria / Temperature / Sample Size / Enzyme / CHEMICAL SCIENCES / Protein Secondary Structure Prediction / Model System / Surface Properties / Low Temperature / Protein Conformation / Amino Acid Sequence / Amino Acid Substitution Rates / Salts / Biology Chemistry / Protein Data Bank / Isoelectric point / Biological Sciences / Sequence alignment / Bacteria / Temperature / Sample Size / Enzyme / CHEMICAL SCIENCES / Protein Secondary Structure Prediction / Model System / Surface Properties / Low Temperature / Protein Conformation / Amino Acid Sequence / Amino Acid Substitution Rates / Salts / Biology Chemistry / Protein Data Bank / Isoelectric point

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ABO(H) Blood Group A and B Glycosyltransferases Recognize Substrate via Specific Conformational Changes

Catalysis / Biological Chemistry / Biological Sciences / Humans / Blood groups / Biological / CHEMICAL SCIENCES / Hydrogen Bonding / Protein Secondary Structure Prediction / Substrate Specificity / Amino Acid Substitution Rates / Conformational Change / Biological / CHEMICAL SCIENCES / Hydrogen Bonding / Protein Secondary Structure Prediction / Substrate Specificity / Amino Acid Substitution Rates / Conformational Change

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Alanine scanning of transmembrane helix 11 of Cdr1p ABC antifungal efflux pump of Candida albicans: identification of amino acid residues critical for drug efflux

Microbiology / Medical Microbiology / Multidrug Resistance / Candida albicans / Antimicrobial chemotherapy / Ketoconazole / Membrane transport proteins / Protein Secondary Structure Prediction / Substrate Specificity / Antifungal Agents / Amino Acid Profile / Efflux Pumps / Amino Acid Sequence / Base Sequence / Amino Acid Substitution Rates / Site-directed Mutagenesis / Ketoconazole / Membrane transport proteins / Protein Secondary Structure Prediction / Substrate Specificity / Antifungal Agents / Amino Acid Profile / Efflux Pumps / Amino Acid Sequence / Base Sequence / Amino Acid Substitution Rates / Site-directed Mutagenesis

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HLA-E monoclonal antibodies recognize shared peptide sequences on classical HLA class Ia: Relevance to human natural HLA antibodies

Immunology / Molecular Immunology / Humans / Human nature / Mice / Animals / Monoclonal Antibodies / Peptides / Protein Secondary Structure Prediction / Indexation / Monoclonal Antibody / Epitopes / Animals / Monoclonal Antibodies / Peptides / Protein Secondary Structure Prediction / Indexation / Monoclonal Antibody / Epitopes

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An ADP/ATP-Specific Mitochondrial Carrier Protein in the Microsporidian Antonospora locustae

Molecular Biology / Mitochondria / Saccharomyces cerevisiae / Phylogeny / Escherichia coli / Membrane transport proteins / Protein Secondary Structure Prediction / Substrate Specificity / Amino Acid Sequence / Base Sequence / Microsporidia / Biochemistry and cell biology / Mitochondrial Proteins / Membrane transport proteins / Protein Secondary Structure Prediction / Substrate Specificity / Amino Acid Sequence / Base Sequence / Microsporidia / Biochemistry and cell biology / Mitochondrial Proteins

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Coarse-Graining Protein Energetics in Sequence Variables

Algorithms / Biophysics / Thermodynamics / RNA / Computational Biology / Linear models / DNA / Protein Design / Computer Simulation / C2H2 zinc fingers / Physical sciences / Cluster Analysis / Low Energy Buildngs / Proteins / Zinc Finger / Protein Secondary Structure Prediction / Protein Conformation / Linear Regression / Amino Acid Sequence / Experimental Data / Coarse Grained Soil / Degree of Freedom / Cluster Expansion / Prediction Accuracy / Linear models / DNA / Protein Design / Computer Simulation / C2H2 zinc fingers / Physical sciences / Cluster Analysis / Low Energy Buildngs / Proteins / Zinc Finger / Protein Secondary Structure Prediction / Protein Conformation / Linear Regression / Amino Acid Sequence / Experimental Data / Coarse Grained Soil / Degree of Freedom / Cluster Expansion / Prediction Accuracy

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deadpan, an essential pan-neural gene in Drosophila, encodes a helix-loop-helix protein similar to the hairy gene product

Biological Sciences / Drosophila / Animals / Neurons / Genes / Protein Secondary Structure Prediction / Amino Acid Sequence / Base Sequence / DNA binding proteins / Molecular Sequence Data / Protein Secondary Structure Prediction / Amino Acid Sequence / Base Sequence / DNA binding proteins / Molecular Sequence Data

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Crystal structure of staphylococcal enterotoxin B, a superantigen

Multidisciplinary / Nature / T cell receptor / Crystal structure / Enterotoxins / Animals / Staphylococcus aureus / Protein Secondary Structure Prediction / X ray diffraction / Protein Conformation / Biological activity / Binding Site / STAPHYLOCOCCAL-ENTEROTOXIN-B / Animals / Staphylococcus aureus / Protein Secondary Structure Prediction / X ray diffraction / Protein Conformation / Biological activity / Binding Site / STAPHYLOCOCCAL-ENTEROTOXIN-B

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A Structural Model for Duck Hepatitis B Virus Core Protein Derived by Extensive Mutagenesis

Virology / Veterinary / Biological Sciences / Models / Mutagenesis / Virus / Epitope mapping / Monoclonal Antibodies / Protein Secondary Structure Prediction / Amino Acid Sequence / Virus / Epitope mapping / Monoclonal Antibodies / Protein Secondary Structure Prediction / Amino Acid Sequence

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Engineering the Exo-loop of Trichoderma reesei Cellobiohydrolase, Cel7A. A comparison with Phanerochaete chrysosporium Cel7D

Molecular Biology / Protein Engineering / Macromolecular X-Ray Crystallography / Molecular / Sequence alignment / Mutation / Trichoderma / Enzyme / Hydrogen Bond / Active site / Protein Secondary Structure Prediction / Amino Acid Sequence / Protein Denaturation / Conformational Change / Microcrystalline Cellulose / Biochemistry and cell biology / Molecular Sequence Data / Mutation / Trichoderma / Enzyme / Hydrogen Bond / Active site / Protein Secondary Structure Prediction / Amino Acid Sequence / Protein Denaturation / Conformational Change / Microcrystalline Cellulose / Biochemistry and cell biology / Molecular Sequence Data

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Trichoplaxin — A new membrane-active antimicrobial peptide from placozoan cDNA

Membranes / Kinetics / Biological Sciences / Humans / Sequence alignment / Animals / Candida / Physical sciences / Surface plasmon resonance / Placozoa / Gram Positive Bacteria / Gram-negative bacteria / Antimicrobial Cationic Peptides / Protein Secondary Structure Prediction / Rats / Amino Acid Sequence / Molecular Sequence Data / Animals / Candida / Physical sciences / Surface plasmon resonance / Placozoa / Gram Positive Bacteria / Gram-negative bacteria / Antimicrobial Cationic Peptides / Protein Secondary Structure Prediction / Rats / Amino Acid Sequence / Molecular Sequence Data

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Engineering the Exo-loop of Trichoderma reesei Cellobiohydrolase, Cel7A. A comparison with Phanerochaete chrysosporium Cel7D

Molecular Biology / Protein Engineering / Macromolecular X-Ray Crystallography / Glycoside hydrolase / Molecular / Crystal structure / Sequence alignment / Mutation / Trichoderma / Enzyme / Hydrogen Bond / Active site / Protein Secondary Structure Prediction / Amino Acid Sequence / Protein Denaturation / Conformational Change / Microcrystalline Cellulose / Biochemistry and cell biology / Molecular Sequence Data / Crystal structure / Sequence alignment / Mutation / Trichoderma / Enzyme / Hydrogen Bond / Active site / Protein Secondary Structure Prediction / Amino Acid Sequence / Protein Denaturation / Conformational Change / Microcrystalline Cellulose / Biochemistry and cell biology / Molecular Sequence Data

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Computational identification of a transiently open L1/S3 pocket for reactivation of mutant p53

Molecular Dynamics Simulation / Computational Biology / Multidisciplinary / Protein Stability / Humans / Protein Secondary Structure Prediction / Reproducibility of Results / Cysteine / Structure activity Relationship / Nature Communications / Oxepins / Protein Secondary Structure Prediction / Reproducibility of Results / Cysteine / Structure activity Relationship / Nature Communications / Oxepins

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N-terminal amphipathic helix as a trigger of hemolytic activity in antimicrobial peptides: A case study in latarcins

Biochemistry / Microbiology / Immunology / Molecular Biology / Computational Biology / Protein Engineering / Molecular modeling / Mutation / EC / Case Study / Animals / Antimicrobial Peptide / AMPs / Antimicrobial Cationic Peptides / Protein Secondary Structure Prediction / Cytotoxic Activity / Ec / Amino Acid Sequence / In Silico / Biochemistry and cell biology / Hemolysis / Proof of Concept / Molecular Sequence Data / Protein Engineering / Molecular modeling / Mutation / EC / Case Study / Animals / Antimicrobial Peptide / AMPs / Antimicrobial Cationic Peptides / Protein Secondary Structure Prediction / Cytotoxic Activity / Ec / Amino Acid Sequence / In Silico / Biochemistry and cell biology / Hemolysis / Proof of Concept / Molecular Sequence Data

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Tissue Plasminogen Activator is Released into Cultured Medium by Cultured Human Uveal Melanocytes

Extracellular Matrix / Western blotting / Biological Sciences / Humans / Protein Secondary Structure Prediction / Melanocytes / Tissue Plasminogen Activator / Pigment Cell / culture medium / Melanocytes / Tissue Plasminogen Activator / Pigment Cell / culture medium

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Structural ( )8 TIM Barrel Model of 3-Hydroxy-3-methylglutaryl-Coenzyme A Lyase

Protein Folding / Biological Chemistry / Gene expression / Biological Sciences / Humans / Sequence alignment / Escherichia coli / Female / Animals / Male / Biological / Infant / Newborn Infant / CHEMICAL SCIENCES / Protein Secondary Structure Prediction / Amino Acid Sequence / Recombinant Proteins / Site-directed Mutagenesis / Molecular Structure / Molecular Sequence Data / Sequence alignment / Escherichia coli / Female / Animals / Male / Biological / Infant / Newborn Infant / CHEMICAL SCIENCES / Protein Secondary Structure Prediction / Amino Acid Sequence / Recombinant Proteins / Site-directed Mutagenesis / Molecular Structure / Molecular Sequence Data

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