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Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods
Algorithms / Molecular Biology / Computational Biology / Molecular Evolution / Nonlinear dynamics / Parameter estimation / Genetic Engineering / Stochastic processes / Biological Sciences / Software / Computer Simulation / HIV protease / Global Optimization / Genome / Predictive value of tests / Parameter estimation / Genetic Engineering / Stochastic processes / Biological Sciences / Software / Computer Simulation / HIV protease / Global Optimization / Genome / Predictive value of tests
Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiata: Implications for lophotrochozoan phylogeny
Evolutionary Biology / Genetics / Zoology / Molecular Evolution / Phylogeny / Close relationships / Animals / Molecular Phylogenetics and Evolution / Mollusca / Genome / Mitochondrial Genome / Molecular phylogenetics / Amino Acid Sequence / Base Sequence / Close relationships / Animals / Molecular Phylogenetics and Evolution / Mollusca / Genome / Mitochondrial Genome / Molecular phylogenetics / Amino Acid Sequence / Base Sequence
Analyses of bifidobacterial prophage-like sequences
Microbiology / Genomics / Medical Microbiology / Phylogeny / Virus / Bacteria / Gene Order / Cluster Analysis / Genome / Gene / Gen / Genome Organization / Dna Packaging / Genetic Recombination / Genomes / Bifidobacterium / Lysogeny / Bacteria / Gene Order / Cluster Analysis / Genome / Gene / Gen / Genome Organization / Dna Packaging / Genetic Recombination / Genomes / Bifidobacterium / Lysogeny
Analyses of bifidobacterial prophage-like sequences
Microbiology / Genomics / Medical Microbiology / Phylogeny / Virus / Bacteria / Gene Order / Cluster Analysis / Genome / Gene / Gen / Genome Organization / Dna Packaging / Genetic Recombination / Genomes / Bifidobacterium / Lysogeny / Bacteria / Gene Order / Cluster Analysis / Genome / Gene / Gen / Genome Organization / Dna Packaging / Genetic Recombination / Genomes / Bifidobacterium / Lysogeny
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
Caenorhabditis elegans / M Rna Processing / Molecular Evolution / Comparative Genomics / Drosophila melanogaster / Sequence Analysis / Arabidopsis thaliana / Biological Sciences / Saccharomyces cerevisiae / Functional Connectivity / Phylogeny / Environmental Sciences / Humans / Genome evolution / Animals / Homo Sapiens / Genome / Proteins / Protein Sequence Analysis / Schizosaccharomyces Pombe / Protein Function Prediction / Yeasts / Eukaryotic Cells / Sequence Analysis / Arabidopsis thaliana / Biological Sciences / Saccharomyces cerevisiae / Functional Connectivity / Phylogeny / Environmental Sciences / Humans / Genome evolution / Animals / Homo Sapiens / Genome / Proteins / Protein Sequence Analysis / Schizosaccharomyces Pombe / Protein Function Prediction / Yeasts / Eukaryotic Cells
The genome sequence of the model ascomycete fungus Podospora anserina
Molecular Evolution / Carbon / Neurospora crassa / Biological Sciences / Environmental Sciences / Expressed Sequence Tags / Genome / Gene Duplication / Fungal genome size / Genome sequence / Sexual Development / Base Sequence / Carbon Source / Molecular Sequence Data / Expressed Sequence Tags / Genome / Gene Duplication / Fungal genome size / Genome sequence / Sexual Development / Base Sequence / Carbon Source / Molecular Sequence Data
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
Caenorhabditis elegans / M Rna Processing / Molecular Evolution / Comparative Genomics / Drosophila melanogaster / Sequence Analysis / Arabidopsis thaliana / Biological Sciences / Saccharomyces cerevisiae / Functional Connectivity / Phylogeny / Environmental Sciences / Humans / Genome evolution / Animals / Homo Sapiens / Genome / Proteins / Protein Sequence Analysis / Schizosaccharomyces Pombe / Protein Function Prediction / Yeasts / Eukaryotic Cells / Sequence Analysis / Arabidopsis thaliana / Biological Sciences / Saccharomyces cerevisiae / Functional Connectivity / Phylogeny / Environmental Sciences / Humans / Genome evolution / Animals / Homo Sapiens / Genome / Proteins / Protein Sequence Analysis / Schizosaccharomyces Pombe / Protein Function Prediction / Yeasts / Eukaryotic Cells
Tocopherol transfer protein deficiency modifies nuclear receptor transcriptional networks in lungs: Modulation by cigarette smoke in vivo
Genetics / Immune response / Tobacco / Inflammation / Oxidative Stress / Nuclear Receptor / Biological Sciences / Liver / Reactive Oxygen Species / Mice / Female / Animals / Microarrays / Gene networks / Gene Network / Genome / Lipid metabolism / Lung / Smoke / Gene Regulatory Networks / Transcription Factor / Lipoprotein(a) / Chip / Adaptive Response / Lipoprotein a / Immunoglobulin / Gene Expression Regulation / Nuclear Receptor / Biological Sciences / Liver / Reactive Oxygen Species / Mice / Female / Animals / Microarrays / Gene networks / Gene Network / Genome / Lipid metabolism / Lung / Smoke / Gene Regulatory Networks / Transcription Factor / Lipoprotein(a) / Chip / Adaptive Response / Lipoprotein a / Immunoglobulin / Gene Expression Regulation
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
Algorithms / Systems Biology / Crowdsourcing / Gene expression / Biological Sciences / Saccharomyces cerevisiae / Mutation / Ribosomal proteins / Genome / Gene Regulatory Networks / Ribosomes / Gene expression profiling / Saccharomyces cerevisiae / Mutation / Ribosomal proteins / Genome / Gene Regulatory Networks / Ribosomes / Gene expression profiling
Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori
Transcriptome / Expressed Sequence Tags / Female / Animals / Male / Genome / Introns / Molecular Sequence Data / Genome / Introns / Molecular Sequence Data
Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata
Genomics / Mitochondria / Daphnia / Crustacea Decapoda / Animal Husbandry / DNA / Phylogeny / Mitochondrial DNA / Female / Animals / Male / Genome / Sexual Maturation / Marine Drugs / DNA / Phylogeny / Mitochondrial DNA / Female / Animals / Male / Genome / Sexual Maturation / Marine Drugs
Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori
Transcriptome / Expressed Sequence Tags / Female / Animals / Male / Genome / Introns / Molecular Sequence Data / Genome / Introns / Molecular Sequence Data
Highly parallel microbial diagnostics using oligonucleotide microarrays
Environmental microbiology / Hybridization / Humans / Microarray / Nucleic acid hybridization / Infection / Bacteria / Viruses / Genome / Clinical Sciences / Sensitivity and Specificity / Genetic Markers / Performance Test / Oligonucleotide / Infection / Bacteria / Viruses / Genome / Clinical Sciences / Sensitivity and Specificity / Genetic Markers / Performance Test / Oligonucleotide
The 18S rRNA from Odontophrynus americanus 2 n and 4 n (Amphibia, Anura) reveals unusual extra sequences in the variable region V2
Genetics / Molecular Evolution / Agricultural Biotechnology / Animals / Anura / Genome / Molecular cloning / Secondary Structure / Xenopus laevis / Base Sequence / Ribosomal DNA / Nucleic Acid Conformation / Molecular Sequence Data / Nucleotide substitution / Secondary structure prediction / Genome / Molecular cloning / Secondary Structure / Xenopus laevis / Base Sequence / Ribosomal DNA / Nucleic Acid Conformation / Molecular Sequence Data / Nucleotide substitution / Secondary structure prediction
The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida)
Genetics / Mitochondria / PCR / Phylogeny / mtDNA / Mitochondrial DNA / Animals / Arachnida / Gene Order / Phylogenetic analysis / Genome / Gene / Bp / Mitochondrial Genome / Secondary Structure / Control Region / cDNA / Base Sequence / Nucleic Acid Conformation / Mitochondrial DNA / Animals / Arachnida / Gene Order / Phylogenetic analysis / Genome / Gene / Bp / Mitochondrial Genome / Secondary Structure / Control Region / cDNA / Base Sequence / Nucleic Acid Conformation
The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida)
Genetics / Mitochondria / PCR / Phylogeny / mtDNA / Mitochondrial DNA / Animals / Arachnida / Gene Order / Phylogenetic analysis / Genome / Gene / Bp / Mitochondrial Genome / Secondary Structure / Control Region / cDNA / Base Sequence / Nucleic Acid Conformation / Mitochondrial DNA / Animals / Arachnida / Gene Order / Phylogenetic analysis / Genome / Gene / Bp / Mitochondrial Genome / Secondary Structure / Control Region / cDNA / Base Sequence / Nucleic Acid Conformation
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