Gene expression profiling

Maximising sensitivity for detecting changes in protein expression: Experimental design using minimal CyDyes

Design / Research Design / Proteomics / Fluorescent Dyes and Reagents / Experimental Design / Biological Sciences / Power / Software / Conception / Brain / Liver / Mice / Animals / Variation / Rats / Myocardium / Sensitivity / Protein Expression / Reproducibility of Results / Wistar Rats / Erwinia / Two-Dimensional Gel Electrophoresis / Sensitivity and Specificity / Proteome / Gene Expression Regulation / Gene expression profiling / Biological Sciences / Power / Software / Conception / Brain / Liver / Mice / Animals / Variation / Rats / Myocardium / Sensitivity / Protein Expression / Reproducibility of Results / Wistar Rats / Erwinia / Two-Dimensional Gel Electrophoresis / Sensitivity and Specificity / Proteome / Gene Expression Regulation / Gene expression profiling

Impact of acute stress on antimicrobial polypeptides mRNA copy number in several tissues of marine sea bass (Dicentrarchus labrax)

Immunology / Molecular Evolution / Phylogeny / Animals / Antimicrobial Cationic Peptides / Physiological Stress Markers / Bass / Gene expression profiling / Physiological Stress Markers / Bass / Gene expression profiling

Deep RNA Sequencing Reveals Hidden Features and Dynamics of Early Gene Transcription in Paramecium bursaria Chlorella Virus 1

Polyadenylation / Multidisciplinary / Transcriptome / Gene Dosage / PLoS one / Chlorella / Time Factors / Host Pathogen Interactions / Gene expression profiling / Chlorella / Time Factors / Host Pathogen Interactions / Gene expression profiling

Impact of acute stress on antimicrobial polypeptides mRNA copy number in several tissues of marine sea bass (Dicentrarchus labrax)

Immunology / Molecular Evolution / Phylogeny / Animals / Antimicrobial Cationic Peptides / Physiological Stress Markers / Bass / Gene expression profiling / Physiological Stress Markers / Bass / Gene expression profiling

Large intra- and inter-individual variability of genes expression levels limits potential predictive value of molecular diagnosis of dysplasia in Barrett’s esophagus

Molecular Biology / Molecular Medicine / Medicine / Gene expression / Levels of selection / Humans / Genetic Testing / Variability / Female / Male / Statistical Significance / Comparative Analysis / Risk factors / Phenotype / Genotype / Esophagus / Molecular Marker / Prognosis / Reproducibility of Results / Genetic variation / Disease Progression / Risk Factors / Boundary Value Problems / Molecular Diagnostic Techniques / Molecular Diagnosis / Genetic Markers / Predictive value of tests / Gene expression profiling / Esophagoscopy / Down-Regulation / Humans / Genetic Testing / Variability / Female / Male / Statistical Significance / Comparative Analysis / Risk factors / Phenotype / Genotype / Esophagus / Molecular Marker / Prognosis / Reproducibility of Results / Genetic variation / Disease Progression / Risk Factors / Boundary Value Problems / Molecular Diagnostic Techniques / Molecular Diagnosis / Genetic Markers / Predictive value of tests / Gene expression profiling / Esophagoscopy / Down-Regulation

Increased EMMPRIN (CD 147) expression during oral carcinogenesis

Immunohistochemistry / Molecular Pathology / Cell line / Humans / Keratinocytes / Female / Oral Cancer / Clinical Sciences / Oral Mucosa / Aged / Middle Aged / Oral Squamous Cell Carcinoma (OSCC) / Lichen Planus / Mouth Neoplasms / Microarray Analysis / Epithelial cells / Mouth mucosa / Western blot / Oral Squamous Cell Carcinoma / Cell Surface Markers / Gene expression profiling / Female / Oral Cancer / Clinical Sciences / Oral Mucosa / Aged / Middle Aged / Oral Squamous Cell Carcinoma (OSCC) / Lichen Planus / Mouth Neoplasms / Microarray Analysis / Epithelial cells / Mouth mucosa / Western blot / Oral Squamous Cell Carcinoma / Cell Surface Markers / Gene expression profiling

Expression dynamics of RpoS/Crl-dependent genes in Escherichia coli

Microbiology / Medical Microbiology / Escherichia coli / Gene expression profiling

Human postnatal dental pulp cells co-differentiate into osteoblasts and endotheliocytes: a pivotal synergy leading to adult bone tissue formation

Immunology / Stem Cells / Cancer / Flow Cytometry / Transmission Electron Microscopy / Stem Cell / Apoptosis / Stem Cell Transplantation / Biological Sciences / Cell Differentiation / Humans / Animals / Cell Death / Cdd / Neurons / Differentiation / Chip / Rats / Adult / Endothelial cell / Time Factors / Adipocytes / Stromal Cells / Three Dimensional / Wistar Rats / Osteogenesis / Angiotensin Converting Enzyme / Osteoblasts / Gene expression profiling / Cell Growth / Stem Cell / Apoptosis / Stem Cell Transplantation / Biological Sciences / Cell Differentiation / Humans / Animals / Cell Death / Cdd / Neurons / Differentiation / Chip / Rats / Adult / Endothelial cell / Time Factors / Adipocytes / Stromal Cells / Three Dimensional / Wistar Rats / Osteogenesis / Angiotensin Converting Enzyme / Osteoblasts / Gene expression profiling / Cell Growth

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

Algorithms / Systems Biology / Crowdsourcing / Gene expression / Biological Sciences / Saccharomyces cerevisiae / Mutation / Ribosomal proteins / Genome / Gene Regulatory Networks / Ribosomes / Gene expression profiling / Saccharomyces cerevisiae / Mutation / Ribosomal proteins / Genome / Gene Regulatory Networks / Ribosomes / Gene expression profiling

Cell type–specific gene expression differences in complex tissues

Technology / Kidney transplantation / Gene expression / Linear models / Biological Sciences / Humans / Animals / Rats / Graft Rejection / Gene Expression Regulation / Gene expression profiling / Humans / Animals / Rats / Graft Rejection / Gene Expression Regulation / Gene expression profiling

Expression of β-galactosidase and β-xylosidase genes during microspore and pollen development

Plant Biology / Mass Spectrometry / Tobacco / Arabidopsis thaliana / Phylogeny / Pollen / P-glycoprotein / POLLEN GERMINATION / Affinity chromatography / Arabidopsis / Pollen analysis / Enzyme / High Pressure Liquid Chromatography / Liquid Chromatography / Electrospray Ionization Mass Spectrometry / Molecular weight / Two-Dimensional Gel Electrophoresis / Base Sequence / Cell Wall / Planta / Cell Expansion / Gene expression profiling / Pollen / P-glycoprotein / POLLEN GERMINATION / Affinity chromatography / Arabidopsis / Pollen analysis / Enzyme / High Pressure Liquid Chromatography / Liquid Chromatography / Electrospray Ionization Mass Spectrometry / Molecular weight / Two-Dimensional Gel Electrophoresis / Base Sequence / Cell Wall / Planta / Cell Expansion / Gene expression profiling

Gene Expression in HL60 Granulocytoids and Human Polymorphonuclear Leukocytes Exposed to Candida albicans 

Immune response / Flow Cytometry / Cytokines / Inflammation / Gene expression / Biological Sciences / Infection and immunity / Humans / Adaptive Immunity / Infection / Candida albicans / Proteins / Adaptive System / Risk factors / Physiological Response / Neutrophils / Human immunodeficiency virus / Genetic Disorder / Risk Factors / Gene Expression Regulation / Gene expression profiling / Functional Equivalence / Biological Sciences / Infection and immunity / Humans / Adaptive Immunity / Infection / Candida albicans / Proteins / Adaptive System / Risk factors / Physiological Response / Neutrophils / Human immunodeficiency virus / Genetic Disorder / Risk Factors / Gene Expression Regulation / Gene expression profiling / Functional Equivalence

Bacterial persistence increases as environmental fitness decreases

Microbiology / Microbial biotechnology / Microbial Biotechnology / Escherichia coli / Microbial / Microarray Analysis / Amino Acid Substitution Rates / Microbial Viability / Acids / Oxidants / Gene expression profiling / Microarray Analysis / Amino Acid Substitution Rates / Microbial Viability / Acids / Oxidants / Gene expression profiling

Loss of photoreceptor potential from retinal progenitor cell cultures, despite improvements in survival

Neuroscience / Stem Cells / Flow Cytometry / Stem Cell / Retina (Ophthalmology) / Cell Culture / Stem Cell Transplantation / Neural stem cell / Cell Differentiation / Mice / Animals / Retina / Retinal Degeneration / Cell Transplantation / Optometry and Ophthalmology / Retinoic Acid / Growth rate / Cell Proliferation / Cell Survival / Neurosciences / Rhodopsin / Gene expression profiling / Cell Culture / Stem Cell Transplantation / Neural stem cell / Cell Differentiation / Mice / Animals / Retina / Retinal Degeneration / Cell Transplantation / Optometry and Ophthalmology / Retinoic Acid / Growth rate / Cell Proliferation / Cell Survival / Neurosciences / Rhodopsin / Gene expression profiling

Osteopontin Expression in Intratumoral Astrocytes Marks Tumor Progression in Gliomas Induced by Prenatal Exposure to N-Ethyl-N-Nitrosourea

Immunohistochemistry / Cell line / Pregnancy / Glioma / Cerebral Cortex / Female / Animals / Astrocyte / Rat Brain / Astrocytes / Osteopontin / Rats / Microarray Analysis / Time Factors / Disease Progression / Transfection / Cell Proliferation / Subventricular Zone / Tumor Progression / Gene Expression Regulation / Gene expression profiling / Female / Animals / Astrocyte / Rat Brain / Astrocytes / Osteopontin / Rats / Microarray Analysis / Time Factors / Disease Progression / Transfection / Cell Proliferation / Subventricular Zone / Tumor Progression / Gene Expression Regulation / Gene expression profiling

Identification of Fn14/TWEAK receptor as a potential therapeutic target in esophageal adenocarcinoma

Cancer / Biopsy / Cell line / Humans / Neoplasm Invasiveness / Disease Progression / Adenocarcinoma / Gene expression profiling / Disease Progression / Adenocarcinoma / Gene expression profiling
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