Gene Regulatory Networks

Network inference via adaptive optimal design

Genetics / Experience Design / Experimental Design / Reverse Engineering / Parameter estimation / Uncertainty / Iterative Design / Gene Regulatory Networks / Network Topology / Large Scale / Adaptive Optimization / Uncertainty / Iterative Design / Gene Regulatory Networks / Network Topology / Large Scale / Adaptive Optimization

Transcriptional Patterns in Peritoneal Tissue of Encapsulating Peritoneal Sclerosis, a Complication of Chronic Peritoneal Dialysis

Kidney diseases / Immunohistochemistry / Multidisciplinary / Signal Transduction / Humans / Female / Male / Leptin / Gene Regulatory Networks / PLoS one / Aged / Middle Aged / Peritoneal Dialysis / Peritoneum / Gene expression profiling / Female / Male / Leptin / Gene Regulatory Networks / PLoS one / Aged / Middle Aged / Peritoneal Dialysis / Peritoneum / Gene expression profiling

Lack of tailless leads to an increase in expression variability in Drosophila embryos

Developmental Biology / Drosophila melanogaster / Transcription Factors / Biological Sciences / Mutation / Animals / Gene Regulatory Networks / Body Patterning / Animals / Gene Regulatory Networks / Body Patterning

PathGen: a transitive gene pathway generator

Bioinformatics / Computational Biology / Gene expression / Biological Sciences / Saccharomyces cerevisiae / Software / Mathematical Sciences / Gene Regulatory Networks / Genes / Gene expression profiling / Software / Mathematical Sciences / Gene Regulatory Networks / Genes / Gene expression profiling

Efficient reconstruction of biological networks via transitive reduction on general purpose graphics processors

Algorithms / Computer Graphics / Biological Sciences / Mathematical Sciences / BMC Bioinformatics / Gene Regulatory Networks

Computational Approaches to Developmental Patterning

Computational Biology / Science / Multidisciplinary / Signal Transduction / Drosophila / Computer Simulation / Animals / Gene Regulatory Networks / Embryonic Development / Body Patterning / Zebrafish / Computer Simulation / Animals / Gene Regulatory Networks / Embryonic Development / Body Patterning / Zebrafish

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

Algorithms / Systems Biology / Crowdsourcing / Gene expression / Biological Sciences / Saccharomyces cerevisiae / Mutation / Ribosomal proteins / Genome / Gene Regulatory Networks / Ribosomes / Gene expression profiling / Saccharomyces cerevisiae / Mutation / Ribosomal proteins / Genome / Gene Regulatory Networks / Ribosomes / Gene expression profiling

Alcohol Sensitivity in Drosophila: Translational Potential of Systems Genetics

Genetics / Drosophila melanogaster / Humans / Female / Animals / Alcohol Drinking / Male / Ethanol / Cluster Analysis / Gene Regulatory Networks / Phenotype / Genotype / Inbreeding / Reproducibility of Results / Genetic variation / Gene Expression Regulation / Alcohol Drinking / Male / Ethanol / Cluster Analysis / Gene Regulatory Networks / Phenotype / Genotype / Inbreeding / Reproducibility of Results / Genetic variation / Gene Expression Regulation

Exome Sequencing Links Corticospinal Motor Neuron Disease to Common Neurodegenerative Disorders

Science / Multidisciplinary / Transcriptome / Humans / Mutation / Animals / Genetic Association Studies / Neurons / Gene Regulatory Networks / SYNAPSES / Zebrafish / Axons / Nucleotides / Exome / Cohort Studies / Animals / Genetic Association Studies / Neurons / Gene Regulatory Networks / SYNAPSES / Zebrafish / Axons / Nucleotides / Exome / Cohort Studies

ATM regulates a DNA damage response posttranscriptional RNA operon in lymphocytes

Hematology / RNA / Radiobiology of Ionizing Radiation / DNA damage / DNA repair / Lymphoma / Humans / Blood / Gene Regulatory Networks / Clinical Sciences / RNA-binding proteins / Lymphocytes / Cell Cycle Proteins / Protein Binding / DNA binding proteins / Gene Expression Regulation / Lymphoma / Humans / Blood / Gene Regulatory Networks / Clinical Sciences / RNA-binding proteins / Lymphocytes / Cell Cycle Proteins / Protein Binding / DNA binding proteins / Gene Expression Regulation

Tocopherol transfer protein deficiency modifies nuclear receptor transcriptional networks in lungs: Modulation by cigarette smoke in vivo

Genetics / Immune response / Tobacco / Inflammation / Oxidative Stress / Nuclear Receptor / Biological Sciences / Liver / Reactive Oxygen Species / Mice / Female / Animals / Microarrays / Gene networks / Gene Network / Genome / Lipid metabolism / Lung / Smoke / Gene Regulatory Networks / Transcription Factor / Lipoprotein(a) / Chip / Adaptive Response / Immunoglobulin / Gene Expression Regulation / Nuclear Receptor / Biological Sciences / Liver / Reactive Oxygen Species / Mice / Female / Animals / Microarrays / Gene networks / Gene Network / Genome / Lipid metabolism / Lung / Smoke / Gene Regulatory Networks / Transcription Factor / Lipoprotein(a) / Chip / Adaptive Response / Immunoglobulin / Gene Expression Regulation

A c-Myc regulatory subnetwork from human transposable element sequences

Humans / Sequence alignment / Gene Regulatory Networks / Base Sequence / Biochemistry and cell biology / Gene expression profiling

Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks

Genomics / Transcription Factors / Humans / Gene Regulatory Networks / Reproducibility of Results

Exome Sequencing Links Corticospinal Motor Neuron Disease to Common Neurodegenerative Disorders

Science / Multidisciplinary / Transcriptome / Humans / Mutation / Animals / Genetic Association Studies / Neurons / Gene Regulatory Networks / SYNAPSES / Zebrafish / Axons / Nucleotides / Exome / Cohort Studies / Animals / Genetic Association Studies / Neurons / Gene Regulatory Networks / SYNAPSES / Zebrafish / Axons / Nucleotides / Exome / Cohort Studies

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

Microbiology / Medical Microbiology / Salmonella Typhimurium / Gene Regulatory Networks / Gene expression profiling

Sequential Logic Model Deciphers Dynamic Transcriptional Control of Gene Expressions

Gene regulation / Transcription Regulation / Morphogenesis / Gene expression / Multidisciplinary / Network Dynamics / Cell Differentiation / Mutagenesis / Animals / Ligand Binding / Gene Regulatory Networks / Transcription Factor / PLoS one / Sea Urchins / mRna expression levels / Sea Urchin / Binding Site / Gene Expression Regulation / Cell Adhesion Molecules / Switching Activity / Finite State Machine / Network Dynamics / Cell Differentiation / Mutagenesis / Animals / Ligand Binding / Gene Regulatory Networks / Transcription Factor / PLoS one / Sea Urchins / mRna expression levels / Sea Urchin / Binding Site / Gene Expression Regulation / Cell Adhesion Molecules / Switching Activity / Finite State Machine

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