Computer Simulation

Specific amino acid recognition by aspartyl-tRNA synthetase studied by free energy simulations

Molecular Biology / Molecular / Sequence alignment / Computer Simulation / Free Energy / Amino Acids / Amino Acid Profile / Protein Conformation / Amino Acid Sequence / Asparagine / Biochemistry and cell biology / Amino Acids / Amino Acid Profile / Protein Conformation / Amino Acid Sequence / Asparagine / Biochemistry and cell biology

Polarization dependence of non-linear gain compression factor in semiconductor optical amplifier

Optics / Nonlinear dynamics / Semiconductors / Computer Simulation / Light / SEMICONDUCTOR OPTICAL AMPLIFIER / Polarization / Optical physics / Theoretical Models / Optics and Photonics / Amplifiers (Electronic) / Equipment Design / Theoretical Model / Equipment Failure Analysis / Electrical And Electronic Engineering / Refractometry / SEMICONDUCTOR OPTICAL AMPLIFIER / Polarization / Optical physics / Theoretical Models / Optics and Photonics / Amplifiers (Electronic) / Equipment Design / Theoretical Model / Equipment Failure Analysis / Electrical And Electronic Engineering / Refractometry

An examination of long-rod penetration in micro-scale using particles

Materials Engineering / Mechanical Engineering / Computer Simulation / Manufacturing Engineering / Materials Processing / Molecular Dynamic Simulation

Sensitivity function-based model reduction: A bacterial gene expression case study

Biotechnology / Multidisciplinary / Genetic Engineering / Computer Simulation / Glucuronidase / Oxygen / Sensitivity and Specificity / Oxygen / Sensitivity and Specificity

Complete damage in elastic and viscoelastic media and its energetics

Engineering / Computer Simulation / Mathematical Sciences / Dimensional / Length scale / Linear System and Response

Humidification dehumidification desalination system using parabolic trough solar air collector

Engineering / Mechanical Engineering / Heat Exchanger / Geothermal Energy / Desalination / Air flow / Computer Simulation / Working Conditions / Water Temperature / CHEMICAL SCIENCES / Sea Water / Fresh water / Interdisciplinary Engineering / Applied Thermal Engineering / Flow Rate / Air flow / Computer Simulation / Working Conditions / Water Temperature / CHEMICAL SCIENCES / Sea Water / Fresh water / Interdisciplinary Engineering / Applied Thermal Engineering / Flow Rate

Multiplicative Jacobian Energy Decomposition Method for Fast Porous Visco-Hyperelastic Soft Tissue Model

Algorithms / Finite element method / Porosity / Computer Simulation / Liver / Animals / Viscosity / Computational Efficiency / Hardness / Real Time / Swine / Reproducibility of Results / Adomian decomposition method / Elastic Modulus / Soft Tissue / Sensitivity and Specificity / X ray Computed Tomography / Animals / Viscosity / Computational Efficiency / Hardness / Real Time / Swine / Reproducibility of Results / Adomian decomposition method / Elastic Modulus / Soft Tissue / Sensitivity and Specificity / X ray Computed Tomography

Kernel Temporal Differences for Neural Decoding

Cognitive Science / Algorithms / Artificial Intelligence / Computer Simulation / Brain Computer Interfaces / Neurosciences

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

Computational Biology / Gene expression / Multidisciplinary / Next generation sequencing / Budding Yeast / Saccharomyces cerevisiae / Computer Simulation / Genome sequence / Base Sequence / Rnaseq / Condition dependence / cDNA library / Gene expression profiling / Saccharomyces cerevisiae / Computer Simulation / Genome sequence / Base Sequence / Rnaseq / Condition dependence / cDNA library / Gene expression profiling

Antiparallel Triple Helices. Structural Characteristics and Stabilization by 8-Amino Derivatives

Thermodynamics / DNA / Computer Simulation / Amines / CHEMICAL SCIENCES / Nucleic Acid Conformation / Oligonucleotides / Nucleic Acid Conformation / Oligonucleotides

Kernel Temporal Differences for Neural Decoding

Cognitive Science / Algorithms / Artificial Intelligence / Computer Simulation / Brain Computer Interfaces / Neurosciences

Influence of mitochondrial DNA level on cellular energy metabolism: implications for mitochondrial diseases

Bioenergetics / Energy Metabolism / Cell line / Mitochondrial DNA / Humans / Computer Simulation / Animals / Mitochondrial Respiratory Chain / Mitochondrial Diseases / Energy Production / Oxidative phosphorylation / Biochemistry and cell biology / Computer Simulation / Animals / Mitochondrial Respiratory Chain / Mitochondrial Diseases / Energy Production / Oxidative phosphorylation / Biochemistry and cell biology

A Bayesian spatiotemporal model for very large data sets

Algorithms / Statistical Analysis / Magnetic Resonance Imaging / Functional MRI / Linear models / Brain / Humans / Variational Bayes / Computer Simulation / Sampling methods / Neuroimage / Regression Analysis / Three Dimensional Imaging / Spatial Information / Approximate Inference / Bayesian model / Time Factors / General Linear Model / Comparative modeling / Large Data Sets / Spatial Correlation / Bayes Theorem / Normal Distribution / Serial Correlation / Gaussian Markov Random Field / graph Laplacian / Random Field / Brain / Humans / Variational Bayes / Computer Simulation / Sampling methods / Neuroimage / Regression Analysis / Three Dimensional Imaging / Spatial Information / Approximate Inference / Bayesian model / Time Factors / General Linear Model / Comparative modeling / Large Data Sets / Spatial Correlation / Bayes Theorem / Normal Distribution / Serial Correlation / Gaussian Markov Random Field / graph Laplacian / Random Field

Lung model parameter estimation by unscented Kalman filter

Nonlinear dynamics / Turkey / Probability / Parameter estimation / Software / Students / Humans / Computer Simulation / Smoking / Female / Male / Universities / Risk factors / Lung / Prevalence / Unscented Kalman Filter / Questionnaires / Adult / Chronic obstructive pulmonary disease / Risk Factors / Respiratory Mechanics / Socioeconomic Factors / Students / Humans / Computer Simulation / Smoking / Female / Male / Universities / Risk factors / Lung / Prevalence / Unscented Kalman Filter / Questionnaires / Adult / Chronic obstructive pulmonary disease / Risk Factors / Respiratory Mechanics / Socioeconomic Factors

Biophysical characterization of a recombinant leucyl aminopeptidase from Bacillus kaustophilus

Biochemistry / Thermodynamics / Dentistry / Structural Biology / Molecular Dynamics Simulation / Genomics / Protein Folding / Proteomics / Biological Physics / Fluorescent Dyes and Reagents / Apoptosis / Structural Genomics / Ion Channels / Macromolecular X-Ray Crystallography / Protein Stability / HIV / Neurospora crassa / Cell line / Humans / Sequence alignment / Computer Simulation / Circular Dichroism / Mice / Animals / Bacillus / Ligand Binding / Temperature / Urea / Enzyme / Molecular cloning / Amino Acids / Protein Sequence Analysis / Cell nucleus / Anti-Bacterial Agents / Protein Secondary Structure Prediction / Success Rate / Spectrum analysis / Trifluoroethanol / Transfection / Protein Conformation / Molecular weight / Large Scale / Amino Acid Sequence / Calcium Chloride / Protein Quaternary Structure / Recombinant Protein / Structure activity Relationship / Recombinant Proteins / Protein Binding / Hydrogen-Ion Concentration / X Ray Crystallography / Structure Determination / Protein Denaturation / Ligands / Sodium Chloride / Biochemistry and cell biology / Solvents / Genomics / Protein Folding / Proteomics / Biological Physics / Fluorescent Dyes and Reagents / Apoptosis / Structural Genomics / Ion Channels / Macromolecular X-Ray Crystallography / Protein Stability / HIV / Neurospora crassa / Cell line / Humans / Sequence alignment / Computer Simulation / Circular Dichroism / Mice / Animals / Bacillus / Ligand Binding / Temperature / Urea / Enzyme / Molecular cloning / Amino Acids / Protein Sequence Analysis / Cell nucleus / Anti-Bacterial Agents / Protein Secondary Structure Prediction / Success Rate / Spectrum analysis / Trifluoroethanol / Transfection / Protein Conformation / Molecular weight / Large Scale / Amino Acid Sequence / Calcium Chloride / Protein Quaternary Structure / Recombinant Protein / Structure activity Relationship / Recombinant Proteins / Protein Binding / Hydrogen-Ion Concentration / X Ray Crystallography / Structure Determination / Protein Denaturation / Ligands / Sodium Chloride / Biochemistry and cell biology / Solvents

Traditional plaster casts and dental digital models: intra-examiner reliability of measurements

Cephalometry / Humans / Computer Simulation / Observer Variation / Dental Models
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