Computational Biology

Molecular ecological network analyses

Soil / Computational Biology / Ecology / Metagenomics / Biological Sciences / Software / Mathematical Sciences / Temperature / BMC Bioinformatics / Soil Microbiology / Ecosystem / Software / Mathematical Sciences / Temperature / BMC Bioinformatics / Soil Microbiology / Ecosystem

Polymerization of non-complementary RNA: Systematic symmetric nucleotide exchanges mainly involving uracil produce mitochondrial RNA transcripts coding for cryptic overlapping genes

Engineering / RNA / Computational Biology / Kinetics / Bio-Inspired Systems / Biological Sciences / Humans / Expressed Sequence Tags / Mitochondrial Genome / Codon / Biosystems / Genetic Code / Nucleotides / Biological Sciences / Humans / Expressed Sequence Tags / Mitochondrial Genome / Codon / Biosystems / Genetic Code / Nucleotides

Multivoxel Pattern Analysis for fMRI Data: A Review

Applied Mathematics / Biomedical Engineering / Computational Biology / Kinetics / Magnetic Resonance Imaging / Support Vector Machines / Linear models / Brain Mapping / Brain / Humans / Neurons / ROC Curve / Oxygen / Time Factors / Normal Distribution / Area Under Curve / Support Vector Machines / Linear models / Brain Mapping / Brain / Humans / Neurons / ROC Curve / Oxygen / Time Factors / Normal Distribution / Area Under Curve

Piecewise multivariate modelling of sequential metabolic profiling data

Metabolism / Computational Biology / Time Series / Kinetics / Principal Component Analysis / Systems Biology / Multivariate Analysis / Biological Sciences / Computer Simulation / Mathematical Sciences / Multivariate Time Series / Animals / BMC Bioinformatics / Time Series Data / Biological systems / Rats / Time Factors / Dynamic Response / Reference Values / Time Course / Predictive value of tests / Mercuric Chloride / Systems Biology / Multivariate Analysis / Biological Sciences / Computer Simulation / Mathematical Sciences / Multivariate Time Series / Animals / BMC Bioinformatics / Time Series Data / Biological systems / Rats / Time Factors / Dynamic Response / Reference Values / Time Course / Predictive value of tests / Mercuric Chloride

Mitotic Occupancy and Lineage-Specific Transcriptional Control of RRNA Genes by Runx2

Pharmacology / Biochemistry / Bioinformatics / Evolutionary Biology / Genetics / Marine Biology / Neuroscience / Environmental Science / Geophysics / Physics / Materials Science / Quantum Physics / Developmental Biology / Immunology / Climate Change / Molecular Biology / Structural Biology / Genomics / RNA / Computational Biology / Transcriptomics / Biotechnology / Systems Biology / Cancer / Biology / Metabolomics / Cell Cycle / Proteomics / Ecology / Drug Discovery / Evolution / Regulation / Nanotechnology / RNA polymerase / Astrophysics / Neurobiology / Medicine / Multidisciplinary / Palaeobiology / Functional Genomics / Nature / Protein synthesis / Cell Division / Signal Transduction / Transcription / Astronomy / DNA / RNA interference / Mitosis / Cell line / Cell Differentiation / Humans / Mice / Animals / Histone Modification / Cell Signalling / Medical Research / Transcription Factor / ribosomal RNA / Multienzyme complexes / RNA Polymerase I / Cell Proliferation / Base Sequence / Cell Fate / Earth Science / Interphase / Marine Biology / Neuroscience / Environmental Science / Geophysics / Physics / Materials Science / Quantum Physics / Developmental Biology / Immunology / Climate Change / Molecular Biology / Structural Biology / Genomics / RNA / Computational Biology / Transcriptomics / Biotechnology / Systems Biology / Cancer / Biology / Metabolomics / Cell Cycle / Proteomics / Ecology / Drug Discovery / Evolution / Regulation / Nanotechnology / RNA polymerase / Astrophysics / Neurobiology / Medicine / Multidisciplinary / Palaeobiology / Functional Genomics / Nature / Protein synthesis / Cell Division / Signal Transduction / Transcription / Astronomy / DNA / RNA interference / Mitosis / Cell line / Cell Differentiation / Humans / Mice / Animals / Histone Modification / Cell Signalling / Medical Research / Transcription Factor / ribosomal RNA / Multienzyme complexes / RNA Polymerase I / Cell Proliferation / Base Sequence / Cell Fate / Earth Science / Interphase

EVpedia: a community web portal for extracellular vesicles research

Bioinformatics / Computational Biology / Databases / Database Management Systems / Software / Humans / Biomedical Research / Exosomes / Computer User Interface Design / Extracellular Space / Extracellular Vesicles / Humans / Biomedical Research / Exosomes / Computer User Interface Design / Extracellular Space / Extracellular Vesicles

Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length

Computational Biology / Molecular Evolution / Proteomics / Signal Transduction / Biological Sciences / Phylogeny / Mathematical Sciences / Network evolution / Biological Networks / Cluster Analysis / Proteins / Biological Network / Compression / Phylogenetic Tree / Computational Molecular Biology / Phylogeny / Mathematical Sciences / Network evolution / Biological Networks / Cluster Analysis / Proteins / Biological Network / Compression / Phylogenetic Tree / Computational Molecular Biology

A computational method to predict genetically encoded rare amino acids in proteins

Genetics / Computational Biology / Biological Sciences / Environmental Sciences / Sequence alignment / Archaea / Amino Acids / Lysine / Amino Acid Profile / Selenoproteins / Amino Acid Sequence / Proteome / Genetic Code / Nucleic Acid Conformation / Computational Method / Molecular Sequence Data / Archaea / Amino Acids / Lysine / Amino Acid Profile / Selenoproteins / Amino Acid Sequence / Proteome / Genetic Code / Nucleic Acid Conformation / Computational Method / Molecular Sequence Data

Deriving simple predictions from complex models to support environmental decision-making

Coastal Management / Ecosystems Ecology / Climate Change / Decision Making / Conservation Biology / Conservation / Computational Biology / Wildlife Biology / Structural Equation Modeling / Computational Modelling / Agent Based Simulation / Modeling / Environmental Management / Biology / Decision And Game Theory / Natural Resource Management / Ecology / Decision Support Systems / Modeling and Simulation / Decision Making Under Uncertainty / Mathematical Modelling / Global Environmental Change / Avian Ecology / Wildlife Conservation / Foraging ecology / Avian Biology / Agent-based modeling / Environmental Change / Ecological Modelling / Nature / Modeling of biological systems / Estuarine Ecology / Decision support system / Simulation / Feeding Ecology / Waterbirds / Individual-based Wildlife Population Models / Nature Conservation / Avian conservation / Shorebirds / Waders / Individual-based modelling / Waterfowl / Wildfowl / Individual-based ecology / Charadriiformes / Waterfowl management / Waterfowl grazing / Wader/shorebird ecology / Wader Foraging Ecology / Complex System Modeling / Wader Spatial Ecology / Simple Model / Model Complexity / Top Down Bottom Up Mitigation Modelling / Wild Bird Feeding / Shorebirds/Waders / Conservation / Computational Biology / Wildlife Biology / Structural Equation Modeling / Computational Modelling / Agent Based Simulation / Modeling / Environmental Management / Biology / Decision And Game Theory / Natural Resource Management / Ecology / Decision Support Systems / Modeling and Simulation / Decision Making Under Uncertainty / Mathematical Modelling / Global Environmental Change / Avian Ecology / Wildlife Conservation / Foraging ecology / Avian Biology / Agent-based modeling / Environmental Change / Ecological Modelling / Nature / Modeling of biological systems / Estuarine Ecology / Decision support system / Simulation / Feeding Ecology / Waterbirds / Individual-based Wildlife Population Models / Nature Conservation / Avian conservation / Shorebirds / Waders / Individual-based modelling / Waterfowl / Wildfowl / Individual-based ecology / Charadriiformes / Waterfowl management / Waterfowl grazing / Wader/shorebird ecology / Wader Foraging Ecology / Complex System Modeling / Wader Spatial Ecology / Simple Model / Model Complexity / Top Down Bottom Up Mitigation Modelling / Wild Bird Feeding / Shorebirds/Waders

In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership

Algorithms / Computational Biology / Sequence Analysis / Discrete Mathematics / Biological Sciences / Saccharomyces cerevisiae / Environmental Sciences / Humans / Sequence alignment / Animals / Nucleic Acids / Enzyme / In Silico / aminoacyl-tRNA synthetase / Nucleotides / Saccharomyces cerevisiae / Environmental Sciences / Humans / Sequence alignment / Animals / Nucleic Acids / Enzyme / In Silico / aminoacyl-tRNA synthetase / Nucleotides

Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data

Genetics / Genomics / RNA / Computational Biology / Transcriptome / Archaea / Bacteria / RNA biology / Archaea / Bacteria / RNA biology

Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome

Computational Biology / Carbon / Photosynthesis / Systems Biology / Signal Transduction / Complex System / Glutamate / Glucose / Global Carbon Cycle / Membrane transport / Nitrogen / Fructose / Plant Roots / Prediction Model / Soil Microbiology / Enzyme / Forest ecosystem / Ecosystem / Next Generation / Soil Fungi / Early Terrestrial Ecosystems / Mycorrhizae / Metabolic pathway / Organic Matter / Populus Tremuloides / Metabolome / Ectomycorrhiza / Molecular Interactions / Gene Expression Regulation / Gene expression profiling / Generic model / Complex System / Glutamate / Glucose / Global Carbon Cycle / Membrane transport / Nitrogen / Fructose / Plant Roots / Prediction Model / Soil Microbiology / Enzyme / Forest ecosystem / Ecosystem / Next Generation / Soil Fungi / Early Terrestrial Ecosystems / Mycorrhizae / Metabolic pathway / Organic Matter / Populus Tremuloides / Metabolome / Ectomycorrhiza / Molecular Interactions / Gene Expression Regulation / Gene expression profiling / Generic model

Metagenomics: DNA sequencing of environmental samples

Pharmacology / Biochemistry / Bioinformatics / Evolutionary Biology / Genetics / Marine Biology / Neuroscience / Environmental Science / Geophysics / Physics / Materials Science / Quantum Physics / Developmental Biology / Immunology / Environmental microbiology / Climate Change / Molecular Biology / Structural Biology / Genomics / RNA / Computational Biology / Transcriptomics / Biotechnology / Systems Biology / Cancer / Biology / Metabolomics / Life Sciences / Cell Cycle / Proteomics / Ecology / Drug Discovery / Evolution / Nanotechnology / Astrophysics / Neurobiology / Medicine / Palaeobiology / Functional Genomics / Nature / Signal Transduction / Astronomy / DNA / Genetics & Microbial Biotechnology / Humans / Animals / Cell Signalling / Medical Research / Base Sequence / Earth Science / Lawrence Berkeley Laboratory / DNA sequence / Marine Biology / Neuroscience / Environmental Science / Geophysics / Physics / Materials Science / Quantum Physics / Developmental Biology / Immunology / Environmental microbiology / Climate Change / Molecular Biology / Structural Biology / Genomics / RNA / Computational Biology / Transcriptomics / Biotechnology / Systems Biology / Cancer / Biology / Metabolomics / Life Sciences / Cell Cycle / Proteomics / Ecology / Drug Discovery / Evolution / Nanotechnology / Astrophysics / Neurobiology / Medicine / Palaeobiology / Functional Genomics / Nature / Signal Transduction / Astronomy / DNA / Genetics & Microbial Biotechnology / Humans / Animals / Cell Signalling / Medical Research / Base Sequence / Earth Science / Lawrence Berkeley Laboratory / DNA sequence

Metagenomics: DNA sequencing of environmental samples

Pharmacology / Biochemistry / Bioinformatics / Evolutionary Biology / Genetics / Marine Biology / Neuroscience / Environmental Science / Geophysics / Physics / Materials Science / Quantum Physics / Developmental Biology / Immunology / Environmental microbiology / Climate Change / Molecular Biology / Structural Biology / Genomics / RNA / Computational Biology / Transcriptomics / Biotechnology / Systems Biology / Cancer / Biology / Metabolomics / Life Sciences / Cell Cycle / Proteomics / Ecology / Drug Discovery / Evolution / Nanotechnology / Astrophysics / Neurobiology / Medicine / Palaeobiology / Functional Genomics / Nature / Signal Transduction / Astronomy / DNA / Genetics & Microbial Biotechnology / Humans / Animals / Cell Signalling / Medical Research / Base Sequence / Earth Science / Lawrence Berkeley Laboratory / DNA sequence / Marine Biology / Neuroscience / Environmental Science / Geophysics / Physics / Materials Science / Quantum Physics / Developmental Biology / Immunology / Environmental microbiology / Climate Change / Molecular Biology / Structural Biology / Genomics / RNA / Computational Biology / Transcriptomics / Biotechnology / Systems Biology / Cancer / Biology / Metabolomics / Life Sciences / Cell Cycle / Proteomics / Ecology / Drug Discovery / Evolution / Nanotechnology / Astrophysics / Neurobiology / Medicine / Palaeobiology / Functional Genomics / Nature / Signal Transduction / Astronomy / DNA / Genetics & Microbial Biotechnology / Humans / Animals / Cell Signalling / Medical Research / Base Sequence / Earth Science / Lawrence Berkeley Laboratory / DNA sequence

Memory-efficient RNA energy landscape exploration

Bioinformatics / Algorithms / Thermodynamics / RNA / Computational Biology / Kinetics / Probability / Software / Nucleic Acid Conformation / Kinetics / Probability / Software / Nucleic Acid Conformation

Transcriptional profile of Paracoccidioides induced by oenothein B, a potential antifungal agent from the Brazilian Cerrado plant Eugenia uniflora

Computational Biology / Brazil / Transcriptome / Biological Sciences / Antifungal Agents / Itraconazole / Ergosterol / Eugenia / Paracoccidioides / Gene expression profiling / Itraconazole / Ergosterol / Eugenia / Paracoccidioides / Gene expression profiling
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