Comparative Genomics

Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities

Genetics / Genomics / Comparative Genomics / Cancer / Life history / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations

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Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities

Genetics / Genomics / Comparative Genomics / Cancer / Life history / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations

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Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities

Genetics / Genomics / Comparative Genomics / Cancer / Life history / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations

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Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities

Genetics / Genomics / Comparative Genomics / Cancer / Life history / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations

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Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities

Genetics / Genomics / Comparative Genomics / Cancer / Life history / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations

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Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities

Genetics / Genomics / Comparative Genomics / Cancer / Life history / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations / Humans / Glioblastoma / Nucleic acid hybridization / Cluster Analysis / Genome Analysis / High Resolution / Human Genome / Disease Progression / Astrocytoma / Nonnegative Matrix Factorization / Unsupervised Classification / Gene expression profiling / Copy Number Alterations

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Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics

Algorithms / Genomics / Computational Biology / Comparative Genomics / DNA damage / Biological Sciences / Environmental Sciences / Cell Viability / Nucleic Acids / Alphaproteobacteria / Experimental Validation / Base Sequence / In Silico / Biological Sciences / Environmental Sciences / Cell Viability / Nucleic Acids / Alphaproteobacteria / Experimental Validation / Base Sequence / In Silico

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RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes

Bioinformatics / Data Mining / Genomics / Polymorphism / Comparative Genomics / Biological Sciences / Humans / Sequence alignment / Mycobacterium tuberculosis / Mathematical Sciences / Animals / BMC Bioinformatics / Human Genome / Pan troglodytes / Genome sequence / In Silico / Full Length Movies / Comparative Genomic Hybridization / Biological Sciences / Humans / Sequence alignment / Mycobacterium tuberculosis / Mathematical Sciences / Animals / BMC Bioinformatics / Human Genome / Pan troglodytes / Genome sequence / In Silico / Full Length Movies / Comparative Genomic Hybridization

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DNA Sequence and Comparative Genomics of pAPEC-O2-R, an Avian Pathogenic Escherichia coli Transmissible R Plasmid

Microbiology / Comparative Genomics / Medical Microbiology / Public Health / Food supply / Escherichia coli / Multidrug Resistance / Animals / Heavy Metal / GC content / Antimicrobial resistance / Human health / Chickens / Antimicrobial agents / Microbial Sensitivity Tests / Human Disease / Open Reading Frame / Quaternary Ammonium Compounds / DNA sequence / Escherichia coli / Multidrug Resistance / Animals / Heavy Metal / GC content / Antimicrobial resistance / Human health / Chickens / Antimicrobial agents / Microbial Sensitivity Tests / Human Disease / Open Reading Frame / Quaternary Ammonium Compounds / DNA sequence

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Comparative interactomics

Computational Biology / Comparative Genomics / Proteomics / Humans / Network evolution / Animals / Biological evolution / Protein Sequence Analysis / Protein Interaction / Biological systems / Model System / Very high throughput / Genetic variation / Biochemistry and cell biology / Interaction Network / Animals / Biological evolution / Protein Sequence Analysis / Protein Interaction / Biological systems / Model System / Very high throughput / Genetic variation / Biochemistry and cell biology / Interaction Network

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EcoCyc: a comprehensive database of

Genomics / Comparative Genomics / Transcription Factors / Signal Transduction / Biological Sciences / Software / Environmental Sciences / Escherichia coli / Gene ontology / Nucleic Acids / Electron Transport / Small RNA / Database Query / Regulatory Network / Computer User Interface Design / Internet / Cell Membrane / Software / Environmental Sciences / Escherichia coli / Gene ontology / Nucleic Acids / Electron Transport / Small RNA / Database Query / Regulatory Network / Computer User Interface Design / Internet / Cell Membrane

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Differentiation of Borrelia burgdorferi sensu lato strains using class I lysyl-tRNA synthetase-encoding genes

Immunology / Comparative Genomics / Medical Microbiology / Sequence Analysis / Lyme disease / Humans / Sequence alignment / Animals / Polymerase Chain Reaction / Borrelia burgdorferi / Amino Acid Sequence / Base Sequence / Sensitivity and Specificity / aminoacyl-tRNA synthetase / Medical Microbiology and Immunology / Molecular Sequence Data / Humans / Sequence alignment / Animals / Polymerase Chain Reaction / Borrelia burgdorferi / Amino Acid Sequence / Base Sequence / Sensitivity and Specificity / aminoacyl-tRNA synthetase / Medical Microbiology and Immunology / Molecular Sequence Data

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Differentiation of Borrelia burgdorferi sensu lato strains using class I lysyl-tRNA synthetase-encoding genes

Immunology / Comparative Genomics / Medical Microbiology / Sequence Analysis / Lyme disease / Humans / Sequence alignment / Animals / Polymerase Chain Reaction / Borrelia burgdorferi / Amino Acid Sequence / Base Sequence / Sensitivity and Specificity / aminoacyl-tRNA synthetase / Medical Microbiology and Immunology / Molecular Sequence Data / Humans / Sequence alignment / Animals / Polymerase Chain Reaction / Borrelia burgdorferi / Amino Acid Sequence / Base Sequence / Sensitivity and Specificity / aminoacyl-tRNA synthetase / Medical Microbiology and Immunology / Molecular Sequence Data

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Large-Scale Comparison of Fungal Sequence Information: Mechanisms of Innovation in Neurospora crassa and Gene Loss in Saccharomyces cerevisiae

Molecular Evolution / Comparative Genomics / Horizontal Gene Transfer / Neurospora crassa / Biological Sciences / Saccharomyces cerevisiae / Expressed Sequence Tags / Genome / Aspergillus Nidulans / Calcium Homeostasis / Genetic variation / Fungal genome size / Large Scale / Gene Family / Saccharomyces cerevisiae / Expressed Sequence Tags / Genome / Aspergillus Nidulans / Calcium Homeostasis / Genetic variation / Fungal genome size / Large Scale / Gene Family

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Successful Lateral Transfer Requires Codon Usage Compatibility Between Foreign Genes and Recipient Genomes

Molecular Evolution / Comparative Genomics / Horizontal Gene Transfer

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Low-pass sequencing for microbial comparative genomics

Genetics / Genomics / Molecular Evolution / Comparative Genomics / Transcription Regulation / Transcription Factors / Biological Sciences / Phylogeny / Archaea / Uv Radiation / Gene Order / GC content / Transcription Factor / Environmental Conditions / Insertion sequence / Reproducibility of Results / Genetic variation / Genome Rearrangement / Genome sequence / Environmental Exposure / Isoelectric point / Transcription Factors / Biological Sciences / Phylogeny / Archaea / Uv Radiation / Gene Order / GC content / Transcription Factor / Environmental Conditions / Insertion sequence / Reproducibility of Results / Genetic variation / Genome Rearrangement / Genome sequence / Environmental Exposure / Isoelectric point

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